Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2BL_EF1E2E996 Traes_2BL_EF1E2E996 |
ta_iwgsc_2bl_v1_8045569 | 6643 | 6947 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2BL_EF1E2E996.1 Traes_2BL_EF1E2E996.1 PAC:31875108 |
Low | No | 243 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -31.934 AMFE: -0.566 GC content %: 56.379 | |
Taestivum_Traes_2BL_EF1E2E996.2 Traes_2BL_EF1E2E996.2 PAC:31875107 |
Low | No | 233 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -36.781 AMFE: -0.626 GC content %: 58.798 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2BL_EF1E2E996.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-73_SBi | |
Taestivum_Traes_2BL_EF1E2E996.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE-4_OS |