GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_F1914C798 Traes_2BL_F1914C798	ta_iwgsc_2bl_v1_8083982	3388	4334	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_F1914C798.1 Traes_2BL_F1914C798.1 PAC:31990787	Low	No	690		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -48.493 AMFE: -0.735 GC content %: 65.942
Taestivum_Traes_2BL_F1914C798.2 Traes_2BL_F1914C798.2 PAC:31990786	Low	No	810		Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -45.654 AMFE: -0.707 GC content %: 64.568
Taestivum_Traes_2BL_F1914C798.3 Traes_2BL_F1914C798.3 PAC:31990788	Low	No	803		Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -46.513 AMFE: -0.717 GC content %: 64.882
Taestivum_Traes_2BL_F1914C798.4 Traes_2BL_F1914C798.4 PAC:31990789	Low	No	686		Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -49.198 AMFE: -0.745 GC content %: 66.035

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).