Gene
Taestivum Traes 2BL FA05ADDFC
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_FA05ADDFC Traes_2BL_FA05ADDFC |
ta_iwgsc_2bl_v1_8015359 | 1 | 679 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_FA05ADDFC.1 Traes_2BL_FA05ADDFC.1 PAC:31995938 |
Low | No | 234 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -20.470 AMFE: -0.479 GC content %: 42.735 | |
| Taestivum_Traes_2BL_FA05ADDFC.2 Traes_2BL_FA05ADDFC.2 PAC:31995935 |
Low | No | 301 | Get ORF Coding potential... Type: noncoding Potential: -0.447 Folding energies... MFEI: -24.086 AMFE: -0.562 GC content %: 42.857 | |
| Taestivum_Traes_2BL_FA05ADDFC.3 Traes_2BL_FA05ADDFC.3 PAC:31995936 |
High | No | 285 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -26.596 AMFE: -0.621 GC content %: 42.807 | |
| Taestivum_Traes_2BL_FA05ADDFC.4 Traes_2BL_FA05ADDFC.4 PAC:31995937 |
Low | No | 234 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -22.521 AMFE: -0.517 GC content %: 43.590 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_2BL_FA05ADDFC.2 | RepBase (RepeatMasker) | 2014-01-31 | L1-8_SBi | |
| Taestivum_Traes_2BL_FA05ADDFC.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-12_SBi | |
| Taestivum_Traes_2BL_FA05ADDFC.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-12_SBi |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
