GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_FDF5ED8FA Traes_2BL_FDF5ED8FA	ta_iwgsc_2bl_v1_8079441	2992	4191	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_FDF5ED8FA.1 Traes_2BL_FDF5ED8FA.1 PAC:31826660	High	No	1033		Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -28.480 AMFE: -0.615 GC content %: 46.273
Taestivum_Traes_2BL_FDF5ED8FA.2 Traes_2BL_FDF5ED8FA.2 PAC:31826661	High	No	612		Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -24.461 AMFE: -0.552 GC content %: 44.281
Taestivum_Traes_2BL_FDF5ED8FA.3 Traes_2BL_FDF5ED8FA.3 PAC:31826659	High	No	252		Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -22.698 AMFE: -0.497 GC content %: 45.635

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).