Gene
Taestivum Traes 2BS 1BF6A52CD
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_1BF6A52CD Traes_2BS_1BF6A52CD |
ta_iwgsc_2bs_v1_5217276 | 1788 | 5553 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_1BF6A52CD.1 Traes_2BS_1BF6A52CD.1 PAC:31967611 |
High | No | 960 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -29.083 AMFE: -0.561 GC content %: 51.875 | |
| Taestivum_Traes_2BS_1BF6A52CD.2 Traes_2BS_1BF6A52CD.2 PAC:31967610 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -31.150 AMFE: -0.584 GC content %: 53.293 | |
| Taestivum_Traes_2BS_1BF6A52CD.3 Traes_2BS_1BF6A52CD.3 PAC:31967613 |
High | No | 1005 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -29.672 AMFE: -0.579 GC content %: 51.244 | |
| Taestivum_Traes_2BS_1BF6A52CD.4 Traes_2BS_1BF6A52CD.4 PAC:31967615 |
High | No | 1661 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -27.694 AMFE: -0.628 GC content %: 44.130 | |
| Taestivum_Traes_2BS_1BF6A52CD.5 Traes_2BS_1BF6A52CD.5 PAC:31967612 |
High | No | 2648 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.651 AMFE: -0.689 GC content %: 40.106 | |
| Taestivum_Traes_2BS_1BF6A52CD.6 Traes_2BS_1BF6A52CD.6 PAC:31967614 |
High | No | 1931 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -29.187 AMFE: -0.697 GC content %: 41.895 | |
| Taestivum_Traes_2BS_1BF6A52CD.7 Traes_2BS_1BF6A52CD.7 PAC:31967616 |
High | No | 2737 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -24.973 AMFE: -0.710 GC content %: 35.148 | |
| Taestivum_Traes_2BS_1BF6A52CD.8 Traes_2BS_1BF6A52CD.8 PAC:31967617 |
High | No | 985 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -24.447 AMFE: -0.654 GC content %: 37.360 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
