Gene
Taestivum Traes 2BS 41D070FB5
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_41D070FB5 Traes_2BS_41D070FB5 |
ta_iwgsc_2bs_v1_5191491 | 147 | 3330 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_41D070FB5.1 Traes_2BS_41D070FB5.1 PAC:31913296 |
High | No | 1283 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -27.584 AMFE: -0.659 GC content %: 41.855 | |
| Taestivum_Traes_2BS_41D070FB5.2 Traes_2BS_41D070FB5.2 PAC:31913295 |
High | No | 1075 | Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -26.474 AMFE: -0.645 GC content %: 41.023 | |
| Taestivum_Traes_2BS_41D070FB5.3 Traes_2BS_41D070FB5.3 PAC:31913297 |
High | No | 1045 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -28.086 AMFE: -0.672 GC content %: 41.818 | |
| Taestivum_Traes_2BS_41D070FB5.4 Traes_2BS_41D070FB5.4 PAC:31913298 |
High | No | 336 | Get ORF Coding potential... Type: noncoding Potential: -0.480 Folding energies... MFEI: -26.250 AMFE: -0.558 GC content %: 47.024 | |
| Taestivum_Traes_2BS_41D070FB5.5 Traes_2BS_41D070FB5.5 PAC:31913299 |
High | No | 513 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -28.070 AMFE: -0.598 GC content %: 46.979 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
