Gene
Taestivum Traes 2BS 5D1B05312
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_5D1B05312 Traes_2BS_5D1B05312 |
ta_iwgsc_2bs_v1_5243829 | 7870 | 13067 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_5D1B05312.1 Traes_2BS_5D1B05312.1 PAC:31832776 |
Low | No | 2026 | Get ORF Coding potential... Type: noncoding Potential: -0.026 Folding energies... MFEI: -31.654 AMFE: -0.653 GC content %: 48.470 | |
| Taestivum_Traes_2BS_5D1B05312.10 Traes_2BS_5D1B05312.10 PAC:31832784 |
Low | No | 1033 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -32.362 AMFE: -0.609 GC content %: 53.146 | |
| Taestivum_Traes_2BS_5D1B05312.11 Traes_2BS_5D1B05312.11 PAC:31832786 |
Low | No | 1089 | Get ORF Coding potential... Type: noncoding Potential: -0.033 Folding energies... MFEI: -32.470 AMFE: -0.627 GC content %: 51.791 | |
| Taestivum_Traes_2BS_5D1B05312.12 Traes_2BS_5D1B05312.12 PAC:31832788 |
High | No | 1300 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -27.100 AMFE: -0.661 GC content %: 41.000 | |
| Taestivum_Traes_2BS_5D1B05312.13 Traes_2BS_5D1B05312.13 PAC:31832787 |
Low | No | 1879 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -30.639 AMFE: -0.698 GC content %: 43.906 | |
| Taestivum_Traes_2BS_5D1B05312.14 Traes_2BS_5D1B05312.14 PAC:31832789 |
Low | No | 1243 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -29.308 AMFE: -0.707 GC content %: 41.432 | |
| Taestivum_Traes_2BS_5D1B05312.15 Traes_2BS_5D1B05312.15 PAC:31832790 |
High | No | 926 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -29.719 AMFE: -0.665 GC content %: 44.708 | |
| Taestivum_Traes_2BS_5D1B05312.16 Traes_2BS_5D1B05312.16 PAC:31832791 |
Low | No | 1915 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -30.935 AMFE: -0.704 GC content %: 43.969 | |
| Taestivum_Traes_2BS_5D1B05312.2 Traes_2BS_5D1B05312.2 PAC:31832777 |
Low | No | 3204 | Get ORF Coding potential... Type: noncoding Potential: -0.095 Folding energies... MFEI: -29.891 AMFE: -0.665 GC content %: 44.944 | |
| Taestivum_Traes_2BS_5D1B05312.3 Traes_2BS_5D1B05312.3 PAC:31832780 |
Low | No | 1629 | Get ORF Coding potential... Type: noncoding Potential: -0.018 Folding energies... MFEI: -30.129 AMFE: -0.623 GC content %: 48.373 | |
| Taestivum_Traes_2BS_5D1B05312.4 Traes_2BS_5D1B05312.4 PAC:31832778 |
Low | No | 1599 | Get ORF Coding potential... Type: noncoding Potential: -0.013 Folding energies... MFEI: -29.950 AMFE: -0.618 GC content %: 48.468 | |
| Taestivum_Traes_2BS_5D1B05312.5 Traes_2BS_5D1B05312.5 PAC:31832779 |
Low | No | 1569 | Get ORF Coding potential... Type: noncoding Potential: -0.011 Folding energies... MFEI: -29.344 AMFE: -0.610 GC content %: 48.120 | |
| Taestivum_Traes_2BS_5D1B05312.6 Traes_2BS_5D1B05312.6 PAC:31832781 |
Low | No | 2358 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -31.293 AMFE: -0.655 GC content %: 47.795 | |
| Taestivum_Traes_2BS_5D1B05312.7 Traes_2BS_5D1B05312.7 PAC:31832782 |
Low | No | 1606 | Get ORF Coding potential... Type: noncoding Potential: -0.051 Folding energies... MFEI: -34.141 AMFE: -0.657 GC content %: 51.930 | |
| Taestivum_Traes_2BS_5D1B05312.8 Traes_2BS_5D1B05312.8 PAC:31832783 |
Low | No | 1089 | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -32.544 AMFE: -0.616 GC content %: 52.801 | |
| Taestivum_Traes_2BS_5D1B05312.9 Traes_2BS_5D1B05312.9 PAC:31832785 |
Low | No | 1003 | Get ORF Coding potential... Type: noncoding Potential: -0.008 Folding energies... MFEI: -32.373 AMFE: -0.606 GC content %: 53.440 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
