GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_629FADCEC1 Traes_2BS_629FADCEC1	ta_iwgsc_2bs_v1_2587822	1	223	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_629FADCEC1.1 Traes_2BS_629FADCEC1.1 PAC:31802531	High	No	223		Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -39.417 AMFE: -0.517 GC content %: 76.233
Taestivum_Traes_2BS_629FADCEC1.2 Traes_2BS_629FADCEC1.2 PAC:31802532	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -40.137 AMFE: -0.517 GC content %: 77.626

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).