GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_642456434 Traes_2BS_642456434	ta_iwgsc_2bs_v1_5155595	4	3852	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_642456434.1 Traes_2BS_642456434.1 PAC:31808075	High	No	419		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -46.897 AMFE: -0.659 GC content %: 71.122
Taestivum_Traes_2BS_642456434.2 Traes_2BS_642456434.2 PAC:31808074	High	No	2828		Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -31.616 AMFE: -0.692 GC content %: 45.686
Taestivum_Traes_2BS_642456434.3 Traes_2BS_642456434.3 PAC:31808076	High	No	1551		Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -26.892 AMFE: -0.695 GC content %: 38.685

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).