GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_7311D09C7 Traes_2BS_7311D09C7	ta_iwgsc_2bs_v1_5222090	1	767	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_7311D09C7.1 Traes_2BS_7311D09C7.1 PAC:31862564	High	No	767		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -34.107 AMFE: -0.604 GC content %: 56.454
Taestivum_Traes_2BS_7311D09C7.2 Traes_2BS_7311D09C7.2 PAC:31862563	High	No	384		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -38.854 AMFE: -0.559 GC content %: 69.531

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).