GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_7ADFD4E86 Traes_2BS_7ADFD4E86	ta_iwgsc_2bs_v1_5171739	2516	4133	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_7ADFD4E86.1 Traes_2BS_7ADFD4E86.1 PAC:31873870	High	No	965		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -23.969 AMFE: -0.659 GC content %: 36.373
Taestivum_Traes_2BS_7ADFD4E86.2 Traes_2BS_7ADFD4E86.2 PAC:31873871	High	No	544		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -24.357 AMFE: -0.586 GC content %: 41.544
Taestivum_Traes_2BS_7ADFD4E86.3 Traes_2BS_7ADFD4E86.3 PAC:31873872	High	No	221		Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -25.339 AMFE: -0.528 GC content %: 47.964

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).