GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_7E04C0EE9 Traes_2BS_7E04C0EE9	ta_iwgsc_2bs_v1_5181220	65	927	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_7E04C0EE9.1 Traes_2BS_7E04C0EE9.1 PAC:31829596	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -36.222 AMFE: -0.671 GC content %: 53.998
Taestivum_Traes_2BS_7E04C0EE9.2 Traes_2BS_7E04C0EE9.2 PAC:31829595	Low	No	276		Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -45.725 AMFE: -0.668 GC content %: 68.478

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).