Gene
Taestivum Traes 2BS CBB6C2F00
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_CBB6C2F00 Traes_2BS_CBB6C2F00 |
ta_iwgsc_2bs_v1_5198838 | 6503 | 14879 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_CBB6C2F00.4 Traes_2BS_CBB6C2F00.4 PAC:31875221 |
High | No | 1784 | Get ORF Coding potential... Type: noncoding Potential: -1.351 Folding energies... MFEI: -28.750 AMFE: -0.616 GC content %: 46.637 | |
| Taestivum_Traes_2BS_CBB6C2F00.5 Traes_2BS_CBB6C2F00.5 PAC:31875222 |
High | No | 1609 | Get ORF Coding potential... Type: noncoding Potential: -1.347 Folding energies... MFEI: -30.255 AMFE: -0.623 GC content %: 48.539 | |
| Taestivum_Traes_2BS_CBB6C2F00.7 Traes_2BS_CBB6C2F00.7 PAC:31875226 |
High | No | 1097 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -28.742 AMFE: -0.667 GC content %: 43.118 | |
| Taestivum_Traes_2BS_CBB6C2F00.8 Traes_2BS_CBB6C2F00.8 PAC:31875224 |
High | No | 1962 | Get ORF Coding potential... Type: noncoding Potential: -1.355 Folding energies... MFEI: -28.517 AMFE: -0.607 GC content %: 46.993 | |
| Taestivum_Traes_2BS_CBB6C2F00.9 Traes_2BS_CBB6C2F00.9 PAC:31875225 |
High | No | 2644 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -27.810 AMFE: -0.645 GC content %: 43.116 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
