GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_DE052698E Traes_2BS_DE052698E	ta_iwgsc_2bs_v1_5235856	13	10124	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_DE052698E.5 Traes_2BS_DE052698E.5 PAC:31744861	High	No	611		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -20.540 AMFE: -0.586 GC content %: 35.025
Taestivum_Traes_2BS_DE052698E.6 Traes_2BS_DE052698E.6 PAC:31744862	High	No	1337		Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -30.202 AMFE: -0.646 GC content %: 46.746

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).