Gene
Taestivum Traes 2BS E191CDAD7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_E191CDAD7 Traes_2BS_E191CDAD7 |
ta_iwgsc_2bs_v1_5246824 | 5076 | 10579 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_E191CDAD7.1 Traes_2BS_E191CDAD7.1 PAC:31873660 |
High | No | 4790 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -27.887 AMFE: -0.676 GC content %: 41.273 | |
| Taestivum_Traes_2BS_E191CDAD7.10 Traes_2BS_E191CDAD7.10 PAC:31873659 |
High | No | 5125 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -27.805 AMFE: -0.670 GC content %: 41.483 | |
| Taestivum_Traes_2BS_E191CDAD7.11 Traes_2BS_E191CDAD7.11 PAC:31873656 |
High | No | 2963 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -24.911 AMFE: -0.666 GC content %: 37.395 | |
| Taestivum_Traes_2BS_E191CDAD7.12 Traes_2BS_E191CDAD7.12 PAC:31873661 |
High | No | 4959 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.774 AMFE: -0.673 GC content %: 41.238 | |
| Taestivum_Traes_2BS_E191CDAD7.13 Traes_2BS_E191CDAD7.13 PAC:31873662 |
High | No | 1737 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.295 AMFE: -0.641 GC content %: 48.820 | |
| Taestivum_Traes_2BS_E191CDAD7.14 Traes_2BS_E191CDAD7.14 PAC:31873663 |
High | No | 5260 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -27.776 AMFE: -0.669 GC content %: 41.502 | |
| Taestivum_Traes_2BS_E191CDAD7.2 Traes_2BS_E191CDAD7.2 PAC:31873651 |
High | No | 4923 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.887 AMFE: -0.667 GC content %: 41.783 | |
| Taestivum_Traes_2BS_E191CDAD7.3 Traes_2BS_E191CDAD7.3 PAC:31873652 |
High | No | 5284 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -27.801 AMFE: -0.668 GC content %: 41.616 | |
| Taestivum_Traes_2BS_E191CDAD7.4 Traes_2BS_E191CDAD7.4 PAC:31873650 |
High | No | 5372 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -27.468 AMFE: -0.664 GC content %: 41.363 | |
| Taestivum_Traes_2BS_E191CDAD7.5 Traes_2BS_E191CDAD7.5 PAC:31873654 |
High | No | 5142 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -27.639 AMFE: -0.668 GC content %: 41.346 | |
| Taestivum_Traes_2BS_E191CDAD7.6 Traes_2BS_E191CDAD7.6 PAC:31873653 |
High | No | 5132 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -27.806 AMFE: -0.667 GC content %: 41.719 | |
| Taestivum_Traes_2BS_E191CDAD7.7 Traes_2BS_E191CDAD7.7 PAC:31873655 |
High | No | 5007 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.815 AMFE: -0.665 GC content %: 41.841 | |
| Taestivum_Traes_2BS_E191CDAD7.8 Traes_2BS_E191CDAD7.8 PAC:31873657 |
High | No | 5265 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -27.848 AMFE: -0.668 GC content %: 41.690 | |
| Taestivum_Traes_2BS_E191CDAD7.9 Traes_2BS_E191CDAD7.9 PAC:31873658 |
High | No | 4838 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -28.007 AMFE: -0.675 GC content %: 41.484 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
