GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BS_F1BD842AB Traes_2BS_F1BD842AB	ta_iwgsc_2bs_v1_5242474	682	3927	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BS_F1BD842AB.1 Traes_2BS_F1BD842AB.1 PAC:31925750	Low	No	1407		Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -25.124 AMFE: -0.662 GC content %: 37.953
Taestivum_Traes_2BS_F1BD842AB.3 Traes_2BS_F1BD842AB.3 PAC:31925749	Low	No	937		Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -31.654 AMFE: -0.656 GC content %: 48.239
Taestivum_Traes_2BS_F1BD842AB.4 Traes_2BS_F1BD842AB.4 PAC:31925751	High	No	414		Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -18.575 AMFE: -0.490 GC content %: 37.923

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).