Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2BS_F7AC42165 Traes_2BS_F7AC42165 |
ta_iwgsc_2bs_v1_5154898 | 13796 | 16672 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2BS_F7AC42165.1 Traes_2BS_F7AC42165.1 PAC:31988017 |
Low | No | 636 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.855 AMFE: -0.601 GC content %: 44.654 | |
Taestivum_Traes_2BS_F7AC42165.2 Traes_2BS_F7AC42165.2 PAC:31988016 |
Low | No | 607 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -31.384 AMFE: -0.666 GC content %: 47.117 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2BS_F7AC42165.2 | RepBase (RepeatMasker) | 2014-01-31 | Copia1_HV-int | |
Taestivum_Traes_2BS_F7AC42165.1 | RepBase (RepeatMasker) | 2014-01-31 | Copia1_HV-int |