Gene
Taestivum Traes 2BS FD01C1351
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BS_FD01C1351 Traes_2BS_FD01C1351 |
ta_iwgsc_2bs_v1_5184934 | 8145 | 12042 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BS_FD01C1351.11 Traes_2BS_FD01C1351.11 PAC:31932670 |
Low | No | 2261 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -32.172 AMFE: -0.672 GC content %: 47.899 | |
| Taestivum_Traes_2BS_FD01C1351.12 Traes_2BS_FD01C1351.12 PAC:31932671 |
Low | No | 2999 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -29.810 AMFE: -0.695 GC content %: 42.881 | |
| Taestivum_Traes_2BS_FD01C1351.13 Traes_2BS_FD01C1351.13 PAC:31932672 |
Low | No | 2864 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -29.550 AMFE: -0.673 GC content %: 43.890 | |
| Taestivum_Traes_2BS_FD01C1351.14 Traes_2BS_FD01C1351.14 PAC:31932678 |
Low | No | 2049 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -25.778 AMFE: -0.680 GC content %: 37.921 | |
| Taestivum_Traes_2BS_FD01C1351.16 Traes_2BS_FD01C1351.16 PAC:31932676 |
Low | No | 1565 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -24.875 AMFE: -0.675 GC content %: 36.869 | |
| Taestivum_Traes_2BS_FD01C1351.17 Traes_2BS_FD01C1351.17 PAC:31932673 |
Low | No | 2766 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -25.568 AMFE: -0.679 GC content %: 37.636 | |
| Taestivum_Traes_2BS_FD01C1351.18 Traes_2BS_FD01C1351.18 PAC:31932677 |
Low | No | 1846 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -25.450 AMFE: -0.677 GC content %: 37.595 | |
| Taestivum_Traes_2BS_FD01C1351.20 Traes_2BS_FD01C1351.20 PAC:31932679 |
Low | No | 3483 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -29.282 AMFE: -0.686 GC content %: 42.664 | |
| Taestivum_Traes_2BS_FD01C1351.24 Traes_2BS_FD01C1351.24 PAC:31932684 |
Low | No | 1654 | Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -25.345 AMFE: -0.675 GC content %: 37.545 | |
| Taestivum_Traes_2BS_FD01C1351.25 Traes_2BS_FD01C1351.25 PAC:31932683 |
Low | No | 3258 | Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -28.800 AMFE: -0.681 GC content %: 42.296 | |
| Taestivum_Traes_2BS_FD01C1351.27 Traes_2BS_FD01C1351.27 PAC:31932687 |
Low | No | 698 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -25.401 AMFE: -0.609 GC content %: 41.691 | |
| Taestivum_Traes_2BS_FD01C1351.28 Traes_2BS_FD01C1351.28 PAC:31932686 |
Low | No | 1438 | Get ORF Coding potential... Type: noncoding Potential: -0.272 Folding energies... MFEI: -25.869 AMFE: -0.654 GC content %: 39.569 | |
| Taestivum_Traes_2BS_FD01C1351.7 Traes_2BS_FD01C1351.7 PAC:31932666 |
Low | No | 2120 | Get ORF Coding potential... Type: noncoding Potential: -0.327 Folding energies... MFEI: -29.962 AMFE: -0.681 GC content %: 44.009 | |
| Taestivum_Traes_2BS_FD01C1351.8 Traes_2BS_FD01C1351.8 PAC:31932667 |
Low | No | 1493 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -30.342 AMFE: -0.655 GC content %: 46.350 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
