GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_01CACA64F Traes_2DL_01CACA64F	ta_iwgsc_2dl_v1_9703234	1113	2142	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_01CACA64F.1 Traes_2DL_01CACA64F.1 PAC:31938203	High	No	731		Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -29.918 AMFE: -0.606 GC content %: 49.384
Taestivum_Traes_2DL_01CACA64F.2 Traes_2DL_01CACA64F.2 PAC:31938204	High	No	695		Get ORF Coding potential... Type: noncoding Potential: -0.591 Folding energies... MFEI: -29.151 AMFE: -0.587 GC content %: 49.640

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).