GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_05EAD505D Traes_2DL_05EAD505D	ta_iwgsc_2dl_v1_9827412	1	538	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_05EAD505D.1 Traes_2DL_05EAD505D.1 PAC:31913473	High	No	538		Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -35.242 AMFE: -0.496 GC content %: 71.004
Taestivum_Traes_2DL_05EAD505D.2 Traes_2DL_05EAD505D.2 PAC:31913474	High	No	386		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -38.808 AMFE: -0.537 GC content %: 72.280

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).