GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_08CE59D74 Traes_2DL_08CE59D74	ta_iwgsc_2dl_v1_9742667	14	325	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_08CE59D74.1 Traes_2DL_08CE59D74.1 PAC:31970129	Low	No	312		Get ORF Coding potential... Type: coding Potential: 0.308 Folding energies... MFEI: -30.577 AMFE: -0.497 GC content %: 61.538
Taestivum_Traes_2DL_08CE59D74.2 Traes_2DL_08CE59D74.2 PAC:31970130	Low	No	255		Get ORF Coding potential... Type: coding Potential: 0.072 Folding energies... MFEI: -28.235 AMFE: -0.462 GC content %: 61.176
Taestivum_Traes_2DL_08CE59D74.3 Traes_2DL_08CE59D74.3 PAC:31970131	Low	No	228		Get ORF Coding potential... Type: coding Potential: 0.087 Folding energies... MFEI: -28.684 AMFE: -0.471 GC content %: 60.965

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).