GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_0BE2C95D6 Traes_2DL_0BE2C95D6	ta_iwgsc_2dl_v1_9910283	3344	4830	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_0BE2C95D6.2 Traes_2DL_0BE2C95D6.2 PAC:32011717	High	No	370		Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -39.946 AMFE: -0.606 GC content %: 65.946
Taestivum_Traes_2DL_0BE2C95D6.3 Traes_2DL_0BE2C95D6.3 PAC:32011718	Low	No	216		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -30.370 AMFE: -0.521 GC content %: 58.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).