Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2DL_136457FBA Traes_2DL_136457FBA |
ta_iwgsc_2dl_v1_9825939 | 10 | 4353 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2DL_136457FBA.1 Traes_2DL_136457FBA.1 PAC:32005842 |
Low | No | 1430 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -31.063 AMFE: -0.656 GC content %: 47.343 | |
Taestivum_Traes_2DL_136457FBA.2 Traes_2DL_136457FBA.2 PAC:32005843 |
Low | No | 1351 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -30.400 AMFE: -0.650 GC content %: 46.780 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2DL_136457FBA.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N2_TA | |
Taestivum_Traes_2DL_136457FBA.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N2_TA |