GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_24C4F8A11 Traes_2DL_24C4F8A11	ta_iwgsc_2dl_v1_9907857	176	615	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_24C4F8A11.1 Traes_2DL_24C4F8A11.1 PAC:31865791	High	No	440		Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -39.136 AMFE: -0.635 GC content %: 61.591
Taestivum_Traes_2DL_24C4F8A11.2 Traes_2DL_24C4F8A11.2 PAC:31865793	High	No	247		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -43.158 AMFE: -0.638 GC content %: 67.611
Taestivum_Traes_2DL_24C4F8A11.3 Traes_2DL_24C4F8A11.3 PAC:31865792	High	No	262		Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -44.580 AMFE: -0.653 GC content %: 68.321

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).