Gene
Taestivum Traes 2DL 3040097A4
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DL_3040097A4 Traes_2DL_3040097A4 |
ta_iwgsc_2dl_v1_9900691 | 7914 | 13138 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DL_3040097A4.1 Traes_2DL_3040097A4.1 PAC:31764562 |
Low | No | 1450 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.434 AMFE: -0.676 GC content %: 46.483 | |
| Taestivum_Traes_2DL_3040097A4.10 Traes_2DL_3040097A4.10 PAC:31764528 |
Low | No | 2603 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -27.161 AMFE: -0.664 GC content %: 40.876 | |
| Taestivum_Traes_2DL_3040097A4.11 Traes_2DL_3040097A4.11 PAC:31764531 |
Low | No | 2282 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.649 AMFE: -0.679 GC content %: 45.136 | |
| Taestivum_Traes_2DL_3040097A4.12 Traes_2DL_3040097A4.12 PAC:31764535 |
Low | No | 3214 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -28.276 AMFE: -0.678 GC content %: 41.724 | |
| Taestivum_Traes_2DL_3040097A4.13 Traes_2DL_3040097A4.13 PAC:31764537 |
Low | No | 2089 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.417 AMFE: -0.685 GC content %: 45.859 | |
| Taestivum_Traes_2DL_3040097A4.14 Traes_2DL_3040097A4.14 PAC:31764532 |
Low | No | 2178 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -31.249 AMFE: -0.686 GC content %: 45.546 | |
| Taestivum_Traes_2DL_3040097A4.15 Traes_2DL_3040097A4.15 PAC:31764534 |
Low | No | 3254 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -28.104 AMFE: -0.675 GC content %: 41.610 | |
| Taestivum_Traes_2DL_3040097A4.16 Traes_2DL_3040097A4.16 PAC:31764533 |
Low | No | 2384 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -30.470 AMFE: -0.680 GC content %: 44.799 | |
| Taestivum_Traes_2DL_3040097A4.17 Traes_2DL_3040097A4.17 PAC:31764536 |
Low | No | 2119 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -31.581 AMFE: -0.688 GC content %: 45.918 | |
| Taestivum_Traes_2DL_3040097A4.18 Traes_2DL_3040097A4.18 PAC:31764540 |
Low | No | 1400 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -31.179 AMFE: -0.668 GC content %: 46.643 | |
| Taestivum_Traes_2DL_3040097A4.19 Traes_2DL_3040097A4.19 PAC:31764543 |
Low | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -31.554 AMFE: -0.671 GC content %: 47.054 | |
| Taestivum_Traes_2DL_3040097A4.2 Traes_2DL_3040097A4.2 PAC:31764524 |
Low | No | 3227 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -28.200 AMFE: -0.678 GC content %: 41.587 | |
| Taestivum_Traes_2DL_3040097A4.20 Traes_2DL_3040097A4.20 PAC:31764541 |
Low | No | 2309 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -27.510 AMFE: -0.666 GC content %: 41.317 | |
| Taestivum_Traes_2DL_3040097A4.21 Traes_2DL_3040097A4.21 PAC:31764538 |
Low | No | 1503 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -30.306 AMFE: -0.659 GC content %: 45.975 | |
| Taestivum_Traes_2DL_3040097A4.22 Traes_2DL_3040097A4.22 PAC:31764542 |
Low | No | 1238 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -31.890 AMFE: -0.662 GC content %: 48.142 | |
| Taestivum_Traes_2DL_3040097A4.23 Traes_2DL_3040097A4.23 PAC:31764539 |
Low | No | 1394 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -31.334 AMFE: -0.668 GC content %: 46.915 | |
| Taestivum_Traes_2DL_3040097A4.24 Traes_2DL_3040097A4.24 PAC:31764544 |
Low | No | 2515 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -27.241 AMFE: -0.665 GC content %: 40.954 | |
| Taestivum_Traes_2DL_3040097A4.25 Traes_2DL_3040097A4.25 PAC:31764547 |
High | No | 2349 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -27.186 AMFE: -0.667 GC content %: 40.741 | |
| Taestivum_Traes_2DL_3040097A4.26 Traes_2DL_3040097A4.26 PAC:31764546 |
Low | No | 2543 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -27.007 AMFE: -0.661 GC content %: 40.857 | |
| Taestivum_Traes_2DL_3040097A4.27 Traes_2DL_3040097A4.27 PAC:31764545 |
Low | No | 2558 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -27.443 AMFE: -0.667 GC content %: 41.126 | |
| Taestivum_Traes_2DL_3040097A4.28 Traes_2DL_3040097A4.28 PAC:31764548 |
High | No | 2200 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -26.755 AMFE: -0.664 GC content %: 40.318 | |
| Taestivum_Traes_2DL_3040097A4.29 Traes_2DL_3040097A4.29 PAC:31764549 |
Low | No | 1270 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -31.638 AMFE: -0.662 GC content %: 47.795 | |
| Taestivum_Traes_2DL_3040097A4.3 Traes_2DL_3040097A4.3 PAC:31764523 |
Low | No | 3316 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.248 AMFE: -0.680 GC content %: 41.556 | |
| Taestivum_Traes_2DL_3040097A4.30 Traes_2DL_3040097A4.30 PAC:31764552 |
Low | No | 1188 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -32.702 AMFE: -0.673 GC content %: 48.569 | |
| Taestivum_Traes_2DL_3040097A4.31 Traes_2DL_3040097A4.31 PAC:31764551 |
Low | No | 1208 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -32.409 AMFE: -0.668 GC content %: 48.510 | |
| Taestivum_Traes_2DL_3040097A4.32 Traes_2DL_3040097A4.32 PAC:31764550 |
Low | No | 1283 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -31.598 AMFE: -0.664 GC content %: 47.623 | |
| Taestivum_Traes_2DL_3040097A4.33 Traes_2DL_3040097A4.33 PAC:31764553 |
Low | No | 3290 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.143 AMFE: -0.678 GC content %: 41.489 | |
| Taestivum_Traes_2DL_3040097A4.34 Traes_2DL_3040097A4.34 PAC:31764555 |
Low | No | 2168 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -31.624 AMFE: -0.694 GC content %: 45.572 | |
| Taestivum_Traes_2DL_3040097A4.35 Traes_2DL_3040097A4.35 PAC:31764554 |
Low | No | 3297 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.217 AMFE: -0.681 GC content %: 41.462 | |
| Taestivum_Traes_2DL_3040097A4.36 Traes_2DL_3040097A4.36 PAC:31764557 |
Low | No | 2263 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -29.651 AMFE: -0.681 GC content %: 43.526 | |
| Taestivum_Traes_2DL_3040097A4.37 Traes_2DL_3040097A4.37 PAC:31764560 |
Low | No | 1278 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -31.800 AMFE: -0.668 GC content %: 47.574 | |
| Taestivum_Traes_2DL_3040097A4.38 Traes_2DL_3040097A4.38 PAC:31764561 |
Low | No | 1444 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -30.914 AMFE: -0.667 GC content %: 46.330 | |
| Taestivum_Traes_2DL_3040097A4.39 Traes_2DL_3040097A4.39 PAC:31764558 |
Low | No | 1429 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -31.267 AMFE: -0.673 GC content %: 46.466 | |
| Taestivum_Traes_2DL_3040097A4.4 Traes_2DL_3040097A4.4 PAC:31764525 |
Low | No | 2148 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -31.546 AMFE: -0.693 GC content %: 45.531 | |
| Taestivum_Traes_2DL_3040097A4.40 Traes_2DL_3040097A4.40 PAC:31764559 |
Low | No | 1316 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -31.337 AMFE: -0.662 GC content %: 47.340 | |
| Taestivum_Traes_2DL_3040097A4.41 Traes_2DL_3040097A4.41 PAC:31764563 |
Low | No | 1452 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -30.854 AMFE: -0.666 GC content %: 46.350 | |
| Taestivum_Traes_2DL_3040097A4.42 Traes_2DL_3040097A4.42 PAC:31764564 |
Low | No | 1186 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -32.546 AMFE: -0.671 GC content %: 48.482 | |
| Taestivum_Traes_2DL_3040097A4.43 Traes_2DL_3040097A4.43 PAC:31764565 |
Low | No | 1298 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -31.495 AMFE: -0.664 GC content %: 47.458 | |
| Taestivum_Traes_2DL_3040097A4.44 Traes_2DL_3040097A4.44 PAC:31764566 |
Low | No | 1443 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -31.213 AMFE: -0.675 GC content %: 46.223 | |
| Taestivum_Traes_2DL_3040097A4.45 Traes_2DL_3040097A4.45 PAC:31764556 |
High | No | 778 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -25.090 AMFE: -0.671 GC content %: 37.404 | |
| Taestivum_Traes_2DL_3040097A4.5 Traes_2DL_3040097A4.5 PAC:31764522 |
Low | No | 3309 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.235 AMFE: -0.680 GC content %: 41.523 | |
| Taestivum_Traes_2DL_3040097A4.6 Traes_2DL_3040097A4.6 PAC:31764526 |
Low | No | 3410 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -28.126 AMFE: -0.679 GC content %: 41.408 | |
| Taestivum_Traes_2DL_3040097A4.7 Traes_2DL_3040097A4.7 PAC:31764530 |
Low | No | 2505 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -27.337 AMFE: -0.666 GC content %: 41.038 | |
| Taestivum_Traes_2DL_3040097A4.8 Traes_2DL_3040097A4.8 PAC:31764527 |
Low | No | 2399 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.270 AMFE: -0.664 GC content %: 41.059 | |
| Taestivum_Traes_2DL_3040097A4.9 Traes_2DL_3040097A4.9 PAC:31764529 |
Low | No | 1340 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -31.261 AMFE: -0.669 GC content %: 46.716 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
