GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_5074E0451 Traes_2DL_5074E0451	ta_iwgsc_2dl_v1_9906836	9615	14599	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_5074E0451.3 Traes_2DL_5074E0451.3 PAC:31902322	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -44.728 AMFE: -0.655 GC content %: 68.274
Taestivum_Traes_2DL_5074E0451.4 Traes_2DL_5074E0451.4 PAC:31902324	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -1.466 Folding energies... MFEI: -22.692 AMFE: -0.542 GC content %: 41.880

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).