GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_6BC04DC9C1 Traes_2DL_6BC04DC9C1	ta_iwgsc_2dl_v1_9745775	1	442	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_6BC04DC9C1.1 Traes_2DL_6BC04DC9C1.1 PAC:31882727	High	No	442		Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -29.910 AMFE: -0.529 GC content %: 56.561
Taestivum_Traes_2DL_6BC04DC9C1.2 Traes_2DL_6BC04DC9C1.2 PAC:31882728	High	No	330		Get ORF Coding potential... Type: noncoding Potential: -0.635 Folding energies... MFEI: -29.636 AMFE: -0.496 GC content %: 59.697

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).