GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_71F120931 Traes_2DL_71F120931	ta_iwgsc_2dl_v1_9899232	1657	5389	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_71F120931.6 Traes_2DL_71F120931.6 PAC:31877426	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -25.678 AMFE: -0.585 GC content %: 43.917
Taestivum_Traes_2DL_71F120931.7 Traes_2DL_71F120931.7 PAC:31877427	Low	No	892		Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -25.415 AMFE: -0.642 GC content %: 39.574

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).