Gene
Taestivum Traes 2DL 798C8CCB3
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DL_798C8CCB3 Traes_2DL_798C8CCB3 |
ta_iwgsc_2dl_v1_9840446 | 7 | 1559 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DL_798C8CCB3.1 Traes_2DL_798C8CCB3.1 PAC:31799502 |
High | No | 391 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -30.742 AMFE: -0.660 GC content %: 46.547 | |
| Taestivum_Traes_2DL_798C8CCB3.2 Traes_2DL_798C8CCB3.2 PAC:31799503 |
High | No | 710 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -29.197 AMFE: -0.662 GC content %: 44.085 | |
| Taestivum_Traes_2DL_798C8CCB3.3 Traes_2DL_798C8CCB3.3 PAC:31799504 |
High | No | 728 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -24.258 AMFE: -0.633 GC content %: 38.324 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
