Gene

Taestivum Traes 2DL 798C8CCB3

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_2DL_798C8CCB3
Traes_2DL_798C8CCB3
ta_iwgsc_2dl_v1_9840446 7 1559 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_2DL_798C8CCB3.1
Traes_2DL_798C8CCB3.1
PAC:31799502
High No 391
Coding potential...
Type: noncoding Potential: -0.804
Folding energies...
MFEI: -30.742 AMFE: -0.660
GC content
%: 46.547
Taestivum_Traes_2DL_798C8CCB3.2
Traes_2DL_798C8CCB3.2
PAC:31799503
High No 710
Coding potential...
Type: noncoding Potential: -0.993
Folding energies...
MFEI: -29.197 AMFE: -0.662
GC content
%: 44.085
Taestivum_Traes_2DL_798C8CCB3.3
Traes_2DL_798C8CCB3.3
PAC:31799504
High No 728
Coding potential...
Type: noncoding Potential: -1.070
Folding energies...
MFEI: -24.258 AMFE: -0.633
GC content
%: 38.324


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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