GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_903A29CBA Traes_2DL_903A29CBA	ta_iwgsc_2dl_v1_9852812	8164	15565	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_903A29CBA.4 Traes_2DL_903A29CBA.4 PAC:31832089	High	No	209		Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -26.794 AMFE: -0.514 GC content %: 52.153
Taestivum_Traes_2DL_903A29CBA.6 Traes_2DL_903A29CBA.6 PAC:31832090	High	No	304		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -20.888 AMFE: -0.496 GC content %: 42.105

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).