GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_A09E5EE8C Traes_2DL_A09E5EE8C	ta_iwgsc_2dl_v1_2905146	38	714	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_A09E5EE8C.1 Traes_2DL_A09E5EE8C.1 PAC:31924244	High	No	558		Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -24.552 AMFE: -0.626 GC content %: 39.247
Taestivum_Traes_2DL_A09E5EE8C.2 Traes_2DL_A09E5EE8C.2 PAC:31924245	High	No	443		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -23.612 AMFE: -0.619 GC content %: 38.149

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).