GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_A25E4387B Traes_2DL_A25E4387B	ta_iwgsc_2dl_v1_9907865	1	4218	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_A25E4387B.10 Traes_2DL_A25E4387B.10 PAC:31826921	Low	No	1043		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.158 AMFE: -0.619 GC content %: 40.652
Taestivum_Traes_2DL_A25E4387B.11 Traes_2DL_A25E4387B.11 PAC:31826922	Low	No	1310		Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -24.756 AMFE: -0.659 GC content %: 37.557
Taestivum_Traes_2DL_A25E4387B.8 Traes_2DL_A25E4387B.8 PAC:31826918	High	No	339		Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -44.248 AMFE: -0.670 GC content %: 66.077
Taestivum_Traes_2DL_A25E4387B.9 Traes_2DL_A25E4387B.9 PAC:31826920	Low	No	1441		Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.669 AMFE: -0.657 GC content %: 40.597

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).