GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_A7ACC965B Traes_2DL_A7ACC965B	ta_iwgsc_2dl_v1_9865066	2	3810	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_A7ACC965B.7 Traes_2DL_A7ACC965B.7 PAC:31981554	High	No	1008		Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -26.617 AMFE: -0.656 GC content %: 40.575
Taestivum_Traes_2DL_A7ACC965B.8 Traes_2DL_A7ACC965B.8 PAC:31981555	High	No	883		Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -29.162 AMFE: -0.602 GC content %: 48.471
Taestivum_Traes_2DL_A7ACC965B.9 Traes_2DL_A7ACC965B.9 PAC:31981556	High	No	788		Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -29.708 AMFE: -0.645 GC content %: 46.066

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).