Gene
Taestivum Traes 2DL B08F158E1
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DL_B08F158E1 Traes_2DL_B08F158E1 |
ta_iwgsc_2dl_v1_5017222 | 1 | 2211 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DL_B08F158E1.1 Traes_2DL_B08F158E1.1 PAC:32010117 |
High | No | 1068 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -26.414 AMFE: -0.615 GC content %: 42.978 | |
| Taestivum_Traes_2DL_B08F158E1.4 Traes_2DL_B08F158E1.4 PAC:32010123 |
High | No | 406 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -24.310 AMFE: -0.571 GC content %: 42.611 | |
| Taestivum_Traes_2DL_B08F158E1.5 Traes_2DL_B08F158E1.5 PAC:32010122 |
High | No | 433 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -23.949 AMFE: -0.567 GC content %: 42.263 | |
| Taestivum_Traes_2DL_B08F158E1.6 Traes_2DL_B08F158E1.6 PAC:32010121 |
High | No | 433 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -23.949 AMFE: -0.567 GC content %: 42.263 | |
| Taestivum_Traes_2DL_B08F158E1.7 Traes_2DL_B08F158E1.7 PAC:32010120 |
High | No | 495 | Get ORF Coding potential... Type: noncoding Potential: -0.772 Folding energies... MFEI: -24.485 AMFE: -0.561 GC content %: 43.636 | |
| Taestivum_Traes_2DL_B08F158E1.8 Traes_2DL_B08F158E1.8 PAC:32010124 |
High | No | 412 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -20.485 AMFE: -0.485 GC content %: 42.233 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
