GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_B6CEDF8AA1 Traes_2DL_B6CEDF8AA1	ta_iwgsc_2dl_v1_9850757	7301	8293	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_B6CEDF8AA1.1 Traes_2DL_B6CEDF8AA1.1 PAC:31949622	High	No	993		Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -28.661 AMFE: -0.638 GC content %: 44.914
Taestivum_Traes_2DL_B6CEDF8AA1.2 Traes_2DL_B6CEDF8AA1.2 PAC:31949621	High	No	460		Get ORF Coding potential... Type: noncoding Potential: -0.508 Folding energies... MFEI: -30.587 AMFE: -0.589 GC content %: 51.957

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).