Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2DL_B7ABC1CB9 Traes_2DL_B7ABC1CB9 |
ta_iwgsc_2dl_v1_9909204 | 21106 | 23316 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2DL_B7ABC1CB9.1 Traes_2DL_B7ABC1CB9.1 PAC:31976765 |
Low | No | 300 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -29.867 AMFE: -0.567 GC content %: 52.667 | |
Taestivum_Traes_2DL_B7ABC1CB9.2 Traes_2DL_B7ABC1CB9.2 PAC:31976764 |
Low | No | 658 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -29.878 AMFE: -0.628 GC content %: 47.568 | |
Taestivum_Traes_2DL_B7ABC1CB9.3 Traes_2DL_B7ABC1CB9.3 PAC:31976766 |
Low | No | 270 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -29.815 AMFE: -0.575 GC content %: 51.852 | |
Taestivum_Traes_2DL_B7ABC1CB9.4 Traes_2DL_B7ABC1CB9.4 PAC:31976767 |
Low | No | 253 | Get ORF Coding potential... Type: noncoding Potential: -1.396 Folding energies... MFEI: -30.791 AMFE: -0.581 GC content %: 52.964 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2DL_B7ABC1CB9.4 | RepBase (RepeatMasker) | 2014-01-31 | TE-3_Mad | |
Taestivum_Traes_2DL_B7ABC1CB9.1 | RepBase (RepeatMasker) | 2014-01-31 | TE-3_Mad | |
Taestivum_Traes_2DL_B7ABC1CB9.2 | RepBase (RepeatMasker) | 2014-01-31 | TE-3_Mad | |
Taestivum_Traes_2DL_B7ABC1CB9.3 | RepBase (RepeatMasker) | 2014-01-31 | TE-3_Mad |