GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_BB3AB7E83 Traes_2DL_BB3AB7E83	ta_iwgsc_2dl_v1_9909279	9059	14487	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_BB3AB7E83.1 Traes_2DL_BB3AB7E83.1 PAC:31771112	High	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -26.952 AMFE: -0.579 GC content %: 46.524
Taestivum_Traes_2DL_BB3AB7E83.2 Traes_2DL_BB3AB7E83.2 PAC:31771111	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -23.356 AMFE: -0.585 GC content %: 39.900

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).