GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_BDA692A7C Traes_2DL_BDA692A7C	ta_iwgsc_2dl_v1_9180412	4	868	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_BDA692A7C.1 Traes_2DL_BDA692A7C.1 PAC:31858687	Low	No	781		Get ORF Coding potential... Type: noncoding Potential: -0.711 Folding energies... MFEI: -27.823 AMFE: -0.645 GC content %: 43.150
Taestivum_Traes_2DL_BDA692A7C.2 Traes_2DL_BDA692A7C.2 PAC:31858688	High	No	512		Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -28.555 AMFE: -0.622 GC content %: 45.898

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).