GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_C06A5A734 Traes_2DL_C06A5A734	ta_iwgsc_2dl_v1_9871631	656	3373	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_C06A5A734.1 Traes_2DL_C06A5A734.1 PAC:31992037	Low	No	892		Get ORF Coding potential... Type: noncoding Potential: -0.082 Folding energies... MFEI: -27.612 AMFE: -0.598 GC content %: 46.188
Taestivum_Traes_2DL_C06A5A734.2 Traes_2DL_C06A5A734.2 PAC:31992035	Low	No	1193		Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -24.451 AMFE: -0.613 GC content %: 39.899
Taestivum_Traes_2DL_C06A5A734.3 Traes_2DL_C06A5A734.3 PAC:31992036	Low	No	1196		Get ORF Coding potential... Type: noncoding Potential: -0.311 Folding energies... MFEI: -24.967 AMFE: -0.622 GC content %: 40.134

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).