Gene
Taestivum Traes 2DL C5363E040
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DL_C5363E040 Traes_2DL_C5363E040 |
ta_iwgsc_2dl_v1_9884336 | 3729 | 4753 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DL_C5363E040.1 Traes_2DL_C5363E040.1 PAC:31995757 |
High | No | 767 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -32.725 AMFE: -0.655 GC content %: 49.935 | |
| Taestivum_Traes_2DL_C5363E040.2 Traes_2DL_C5363E040.2 PAC:31995760 |
High | No | 941 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -31.945 AMFE: -0.669 GC content %: 47.715 | |
| Taestivum_Traes_2DL_C5363E040.3 Traes_2DL_C5363E040.3 PAC:31995758 |
High | No | 721 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -32.649 AMFE: -0.656 GC content %: 49.792 | |
| Taestivum_Traes_2DL_C5363E040.4 Traes_2DL_C5363E040.4 PAC:31995756 |
High | No | 659 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -33.596 AMFE: -0.653 GC content %: 51.442 | |
| Taestivum_Traes_2DL_C5363E040.5 Traes_2DL_C5363E040.5 PAC:31995759 |
High | No | 744 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -33.387 AMFE: -0.668 GC content %: 50.000 | |
| Taestivum_Traes_2DL_C5363E040.6 Traes_2DL_C5363E040.6 PAC:31995762 |
High | No | 797 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -28.407 AMFE: -0.636 GC content %: 44.668 | |
| Taestivum_Traes_2DL_C5363E040.7 Traes_2DL_C5363E040.7 PAC:31995761 |
High | No | 543 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -28.287 AMFE: -0.607 GC content %: 46.593 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
