GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_C93772319 Traes_2DL_C93772319	ta_iwgsc_2dl_v1_9765245	1	1203	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_C93772319.3 Traes_2DL_C93772319.3 PAC:31989391	High	No	310		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -24.806 AMFE: -0.561 GC content %: 44.194
Taestivum_Traes_2DL_C93772319.4 Traes_2DL_C93772319.4 PAC:31989392	High	No	470		Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -25.064 AMFE: -0.580 GC content %: 43.191

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).