GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DL_CFF382BCC Traes_2DL_CFF382BCC	ta_iwgsc_2dl_v1_8723759	123	1044	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DL_CFF382BCC.1 Traes_2DL_CFF382BCC.1 PAC:31814331	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -29.160 AMFE: -0.593 GC content %: 49.145
Taestivum_Traes_2DL_CFF382BCC.2 Traes_2DL_CFF382BCC.2 PAC:31814330	High	No	673		Get ORF Coding potential... Type: noncoding Potential: -0.436 Folding energies... MFEI: -29.242 AMFE: -0.589 GC content %: 49.629

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).