GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DS_020D67AB6 Traes_2DS_020D67AB6	ta_iwgsc_2ds_v1_5388702	1192	4009	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DS_020D67AB6.1 Traes_2DS_020D67AB6.1 PAC:31831905	Low	No	554		Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -32.545 AMFE: -0.646 GC content %: 50.361
Taestivum_Traes_2DS_020D67AB6.2 Traes_2DS_020D67AB6.2 PAC:31831906	Low	No	496		Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -32.379 AMFE: -0.645 GC content %: 50.202

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).