Gene
Taestivum Traes 2DS 1B8934289
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DS_1B8934289 Traes_2DS_1B8934289 |
ta_iwgsc_2ds_v1_5354429 | 2635 | 8449 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DS_1B8934289.1 Traes_2DS_1B8934289.1 PAC:31894856 |
Low | No | 1815 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -27.036 AMFE: -0.681 GC content %: 39.725 | |
| Taestivum_Traes_2DS_1B8934289.10 Traes_2DS_1B8934289.10 PAC:31894839 |
Low | No | 1674 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -30.866 AMFE: -0.665 GC content %: 46.416 | |
| Taestivum_Traes_2DS_1B8934289.11 Traes_2DS_1B8934289.11 PAC:31894841 |
Low | No | 1252 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -31.086 AMFE: -0.656 GC content %: 47.364 | |
| Taestivum_Traes_2DS_1B8934289.12 Traes_2DS_1B8934289.12 PAC:31894840 |
Low | No | 1325 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -30.536 AMFE: -0.657 GC content %: 46.491 | |
| Taestivum_Traes_2DS_1B8934289.13 Traes_2DS_1B8934289.13 PAC:31894837 |
Low | No | 1678 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -30.656 AMFE: -0.661 GC content %: 46.365 | |
| Taestivum_Traes_2DS_1B8934289.14 Traes_2DS_1B8934289.14 PAC:31894838 |
Low | No | 1659 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -31.193 AMFE: -0.667 GC content %: 46.775 | |
| Taestivum_Traes_2DS_1B8934289.15 Traes_2DS_1B8934289.15 PAC:31894842 |
Low | No | 919 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -33.210 AMFE: -0.662 GC content %: 50.163 | |
| Taestivum_Traes_2DS_1B8934289.16 Traes_2DS_1B8934289.16 PAC:31894843 |
Low | No | 919 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -29.184 AMFE: -0.656 GC content %: 44.505 | |
| Taestivum_Traes_2DS_1B8934289.17 Traes_2DS_1B8934289.17 PAC:31894844 |
Low | No | 2019 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -30.168 AMFE: -0.666 GC content %: 45.270 | |
| Taestivum_Traes_2DS_1B8934289.18 Traes_2DS_1B8934289.18 PAC:31894851 |
Low | No | 1637 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -31.466 AMFE: -0.666 GC content %: 47.282 | |
| Taestivum_Traes_2DS_1B8934289.19 Traes_2DS_1B8934289.19 PAC:31894846 |
Low | No | 1581 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -30.898 AMFE: -0.659 GC content %: 46.869 | |
| Taestivum_Traes_2DS_1B8934289.2 Traes_2DS_1B8934289.2 PAC:31894830 |
Low | No | 1505 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -31.468 AMFE: -0.663 GC content %: 47.442 | |
| Taestivum_Traes_2DS_1B8934289.20 Traes_2DS_1B8934289.20 PAC:31894845 |
Low | No | 1637 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.179 AMFE: -0.666 GC content %: 46.793 | |
| Taestivum_Traes_2DS_1B8934289.21 Traes_2DS_1B8934289.21 PAC:31894850 |
Low | No | 2272 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -29.886 AMFE: -0.683 GC content %: 43.750 | |
| Taestivum_Traes_2DS_1B8934289.22 Traes_2DS_1B8934289.22 PAC:31894849 |
Low | No | 1879 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -28.377 AMFE: -0.681 GC content %: 41.671 | |
| Taestivum_Traes_2DS_1B8934289.23 Traes_2DS_1B8934289.23 PAC:31894848 |
High | No | 1327 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -29.390 AMFE: -0.668 GC content %: 44.009 | |
| Taestivum_Traes_2DS_1B8934289.24 Traes_2DS_1B8934289.24 PAC:31894847 |
Low | No | 1395 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -32.265 AMFE: -0.667 GC content %: 48.387 | |
| Taestivum_Traes_2DS_1B8934289.25 Traes_2DS_1B8934289.25 PAC:31894852 |
Low | No | 1940 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -27.985 AMFE: -0.676 GC content %: 41.392 | |
| Taestivum_Traes_2DS_1B8934289.26 Traes_2DS_1B8934289.26 PAC:31894853 |
High | No | 1114 | Get ORF Coding potential... Type: noncoding Potential: -1.321 Folding energies... MFEI: -27.908 AMFE: -0.637 GC content %: 43.806 | |
| Taestivum_Traes_2DS_1B8934289.27 Traes_2DS_1B8934289.27 PAC:31894854 |
Low | No | 1592 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -30.986 AMFE: -0.664 GC content %: 46.671 | |
| Taestivum_Traes_2DS_1B8934289.28 Traes_2DS_1B8934289.28 PAC:31894857 |
Low | No | 837 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -30.167 AMFE: -0.668 GC content %: 45.161 | |
| Taestivum_Traes_2DS_1B8934289.29 Traes_2DS_1B8934289.29 PAC:31894855 |
Low | No | 1651 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -31.236 AMFE: -0.668 GC content %: 46.760 | |
| Taestivum_Traes_2DS_1B8934289.3 Traes_2DS_1B8934289.3 PAC:31894829 |
Low | No | 1238 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -30.380 AMFE: -0.653 GC content %: 46.527 | |
| Taestivum_Traes_2DS_1B8934289.4 Traes_2DS_1B8934289.4 PAC:31894831 |
Low | No | 1188 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -28.131 AMFE: -0.649 GC content %: 43.350 | |
| Taestivum_Traes_2DS_1B8934289.5 Traes_2DS_1B8934289.5 PAC:31894832 |
High | No | 654 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -31.070 AMFE: -0.653 GC content %: 47.554 | |
| Taestivum_Traes_2DS_1B8934289.6 Traes_2DS_1B8934289.6 PAC:31894835 |
Low | No | 1233 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -30.989 AMFE: -0.652 GC content %: 47.526 | |
| Taestivum_Traes_2DS_1B8934289.7 Traes_2DS_1B8934289.7 PAC:31894834 |
Low | No | 1626 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -31.439 AMFE: -0.666 GC content %: 47.232 | |
| Taestivum_Traes_2DS_1B8934289.8 Traes_2DS_1B8934289.8 PAC:31894833 |
Low | No | 939 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -32.204 AMFE: -0.642 GC content %: 50.160 | |
| Taestivum_Traes_2DS_1B8934289.9 Traes_2DS_1B8934289.9 PAC:31894836 |
Low | No | 2331 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -29.914 AMFE: -0.685 GC content %: 43.672 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
