Gene
Taestivum Traes 2DS 229D264D2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DS_229D264D2 Traes_2DS_229D264D2 |
ta_iwgsc_2ds_v1_5323778 | 865 | 7590 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DS_229D264D2.11 Traes_2DS_229D264D2.11 PAC:31831111 |
Low | No | 2169 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -30.761 AMFE: -0.667 GC content %: 46.104 | |
| Taestivum_Traes_2DS_229D264D2.12 Traes_2DS_229D264D2.12 PAC:31831119 |
Low | No | 1518 | Get ORF Coding potential... Type: noncoding Potential: -0.017 Folding energies... MFEI: -33.379 AMFE: -0.654 GC content %: 51.054 | |
| Taestivum_Traes_2DS_229D264D2.15 Traes_2DS_229D264D2.15 PAC:31831120 |
Low | No | 2166 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -30.291 AMFE: -0.659 GC content %: 45.937 | |
| Taestivum_Traes_2DS_229D264D2.16 Traes_2DS_229D264D2.16 PAC:31831113 |
Low | No | 2161 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -30.301 AMFE: -0.656 GC content %: 46.182 | |
| Taestivum_Traes_2DS_229D264D2.17 Traes_2DS_229D264D2.17 PAC:31831123 |
Low | No | 969 | Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -30.454 AMFE: -0.644 GC content %: 47.265 | |
| Taestivum_Traes_2DS_229D264D2.5 Traes_2DS_229D264D2.5 PAC:31831110 |
High | No | 1314 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -22.747 AMFE: -0.641 GC content %: 35.464 | |
| Taestivum_Traes_2DS_229D264D2.6 Traes_2DS_229D264D2.6 PAC:31831121 |
Low | No | 1585 | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -33.798 AMFE: -0.657 GC content %: 51.420 | |
| Taestivum_Traes_2DS_229D264D2.8 Traes_2DS_229D264D2.8 PAC:31831117 |
Low | No | 2249 | Get ORF Coding potential... Type: noncoding Potential: -0.051 Folding energies... MFEI: -30.360 AMFE: -0.661 GC content %: 45.932 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
