Gene
Taestivum Traes 2DS 2D259D9B8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DS_2D259D9B8 Traes_2DS_2D259D9B8 |
ta_iwgsc_2ds_v1_5344336 | 1 | 5247 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DS_2D259D9B8.1 Traes_2DS_2D259D9B8.1 PAC:31850563 |
High | No | 1156 | Get ORF Coding potential... Type: noncoding Potential: -0.100 Folding energies... MFEI: -27.154 AMFE: -0.623 GC content %: 43.599 | |
| Taestivum_Traes_2DS_2D259D9B8.3 Traes_2DS_2D259D9B8.3 PAC:31850560 |
Low | No | 1052 | Get ORF Coding potential... Type: coding Potential: 0.052 Folding energies... MFEI: -29.553 AMFE: -0.642 GC content %: 46.008 | |
| Taestivum_Traes_2DS_2D259D9B8.4 Traes_2DS_2D259D9B8.4 PAC:31850562 |
High | No | 968 | Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -30.919 AMFE: -0.649 GC content %: 47.624 | |
| Taestivum_Traes_2DS_2D259D9B8.5 Traes_2DS_2D259D9B8.5 PAC:31850561 |
Low | No | 1269 | Get ORF Coding potential... Type: coding Potential: 0.089 Folding energies... MFEI: -28.030 AMFE: -0.647 GC content %: 43.341 | |
| Taestivum_Traes_2DS_2D259D9B8.6 Traes_2DS_2D259D9B8.6 PAC:31850564 |
High | No | 904 | Get ORF Coding potential... Type: noncoding Potential: -0.039 Folding energies... MFEI: -30.852 AMFE: -0.646 GC content %: 47.788 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
