GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DS_31FE2B248 Traes_2DS_31FE2B248	ta_iwgsc_2ds_v1_5384592	1423	2626	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DS_31FE2B248.3 Traes_2DS_31FE2B248.3 PAC:31735697	Low	No	297		Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -35.219 AMFE: -0.598 GC content %: 58.923
Taestivum_Traes_2DS_31FE2B248.4 Traes_2DS_31FE2B248.4 PAC:31735698	Low	No	289		Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -34.706 AMFE: -0.590 GC content %: 58.824

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).