GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DS_698DAD811 Traes_2DS_698DAD811	ta_iwgsc_2ds_v1_5389716	5423	8319	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DS_698DAD811.2 Traes_2DS_698DAD811.2 PAC:31972056	High	No	553		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -29.747 AMFE: -0.609 GC content %: 48.825
Taestivum_Traes_2DS_698DAD811.3 Traes_2DS_698DAD811.3 PAC:31972057	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -29.800 AMFE: -0.599 GC content %: 49.750

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).