Gene
Taestivum Traes 2DS 6C633F436
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2DS_6C633F436 Traes_2DS_6C633F436 |
ta_iwgsc_2ds_v1_5375104 | 6885 | 11687 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2DS_6C633F436.1 Traes_2DS_6C633F436.1 PAC:31735569 |
High | No | 2057 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -28.123 AMFE: -0.620 GC content %: 45.357 | |
| Taestivum_Traes_2DS_6C633F436.11 Traes_2DS_6C633F436.11 PAC:31735580 |
High | No | 2824 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -26.292 AMFE: -0.620 GC content %: 42.387 | |
| Taestivum_Traes_2DS_6C633F436.12 Traes_2DS_6C633F436.12 PAC:31735579 |
High | No | 3718 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -25.742 AMFE: -0.633 GC content %: 40.667 | |
| Taestivum_Traes_2DS_6C633F436.13 Traes_2DS_6C633F436.13 PAC:31735578 |
High | No | 2041 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -28.261 AMFE: -0.622 GC content %: 45.468 | |
| Taestivum_Traes_2DS_6C633F436.14 Traes_2DS_6C633F436.14 PAC:31735577 |
High | No | 2995 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -26.651 AMFE: -0.636 GC content %: 41.937 | |
| Taestivum_Traes_2DS_6C633F436.15 Traes_2DS_6C633F436.15 PAC:31735571 |
High | No | 2886 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -23.940 AMFE: -0.656 GC content %: 36.521 | |
| Taestivum_Traes_2DS_6C633F436.2 Traes_2DS_6C633F436.2 PAC:31735566 |
Low | No | 2089 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -28.320 AMFE: -0.625 GC content %: 45.333 | |
| Taestivum_Traes_2DS_6C633F436.3 Traes_2DS_6C633F436.3 PAC:31735567 |
Low | No | 2135 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -28.028 AMFE: -0.621 GC content %: 45.152 | |
| Taestivum_Traes_2DS_6C633F436.4 Traes_2DS_6C633F436.4 PAC:31735568 |
Low | No | 2139 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -28.284 AMFE: -0.634 GC content %: 44.600 | |
| Taestivum_Traes_2DS_6C633F436.6 Traes_2DS_6C633F436.6 PAC:31735572 |
Low | No | 2145 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -28.061 AMFE: -0.620 GC content %: 45.268 | |
| Taestivum_Traes_2DS_6C633F436.7 Traes_2DS_6C633F436.7 PAC:31735573 |
Low | No | 1770 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -26.746 AMFE: -0.652 GC content %: 41.017 | |
| Taestivum_Traes_2DS_6C633F436.8 Traes_2DS_6C633F436.8 PAC:31735574 |
Low | No | 799 | Get ORF Coding potential... Type: noncoding Potential: -0.419 Folding energies... MFEI: -23.905 AMFE: -0.630 GC content %: 37.922 | |
| Taestivum_Traes_2DS_6C633F436.9 Traes_2DS_6C633F436.9 PAC:31735575 |
Low | No | 2224 | Get ORF Coding potential... Type: noncoding Potential: -0.066 Folding energies... MFEI: -27.738 AMFE: -0.618 GC content %: 44.919 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
