GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2DS_B0F45838C Traes_2DS_B0F45838C	ta_iwgsc_2ds_v1_5379202	665	1761	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2DS_B0F45838C.1 Traes_2DS_B0F45838C.1 PAC:31898984	High	No	349		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -32.579 AMFE: -0.560 GC content %: 58.166
Taestivum_Traes_2DS_B0F45838C.2 Traes_2DS_B0F45838C.2 PAC:31898982	High	No	248		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -36.250 AMFE: -0.638 GC content %: 56.855
Taestivum_Traes_2DS_B0F45838C.3 Traes_2DS_B0F45838C.3 PAC:31898983	High	No	242		Get ORF Coding potential... Type: noncoding Potential: -0.644 Folding energies... MFEI: -36.570 AMFE: -0.651 GC content %: 56.198

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).